Table 1: Abbreviations (Code) used for nucleotides
IUPAC nucleotide code | Base |
A | Adenine |
C | Cytosine |
G | Guanine |
T (or U) | Thymine (or Uracil) |
R | A or G |
Y | C or T |
S | G or C |
W | A or T |
K | G or T |
M | A or C |
B | C or G or T |
D | A or G or T |
H | A or C or T |
V | A or C or G |
N | any base |
. or - | gap |
Table 2: Abbreviations (Code) used for amino acids
IUPAC amino acid code | Three letter code | Amino acid |
A | Ala | Alanine |
C | Cys | Cysteine |
D | Asp | Aspartic Acid |
E | Glu | Glutamic Acid |
F | Phe | Phenylalanine |
G | Gly | Glycine |
H | His | Histidine |
I | Ile | Isoleucine |
K | Lys | Lysine |
L | Leu | Leucine |
M | Met | Methionine |
N | Asn | Asparagine |
P | Pro | Proline |
Q | Gln | Glutamine |
R | Arg | Arginine |
S | Ser | Serine |
T | Thr | Threonine |
V | Val | Valine |
W | Trp | Tryptophan |
Y | Tyr | Tyrosine |
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